SC@FIT - Supercomputing Technologies Research Group

Publications

2018BORDOVSKÝ Gabriel. Challenges In the Computer Photoacoustic Tomograpy Using the k-Wave Toolbox. In: Počítačové architektúry & diagnostika PAD 2018. Plzeň: University of West Bohemia in Pilsen, 2018, pp. 49-52. ISBN 978-80-261-0814-6.
 DANTUMA Maura, LUCKA Felix, TREEBY Bradley E., JARO© Jiří, COX Ben T. and MANOHAR Srirang. Signal Frequency Content and Appearance of Tumors in Photoacoustic Breast Tomography: A Simulation. Caparica, 2018.
 JARO© Marta. Scientific Workflows Management. In: Počítačové architektúry & diagnostika PAD 2018. Plzeň: University of West Bohemia in Pilsen, 2018, pp. 25-28. ISBN 978-80-261-0814-6.
 KADLUBIAK Kristián, JARO© Jiří and TREEBY Bradley E. GPU-accelerated Simulation of Elastic Wave Propagation. Frankfurt am Main, 2018.
 KLEPÁRNÍK Petr, BAŘINA David, ZEMČÍK Pavel and JARO© Jiří. Efficient Low-Resource Compression of HIFU Data. Information. Basel: MDPI, 2018, vol. 9, no. 7, pp. 1-14. ISSN 2078-2489.
 KOZUBEK Tomáą, ČERMÁK Martin, TICHÝ Petr, BLAHETA Radim, ©ÍSTEK Jakub, LUKÁ© Dalibor and JARO© Jiří, ed. HPCSE: 3rd International Conference on High Performance Computing in Science and Engineering. Cham: Springer International Publishing, 2018. ISBN 978-3-319-97135-3.
 SUOMI Visa, TREEBY Bradley E., JARO© Jiří, SAUNAVAARA Jani, KIVINIEMI Aida and BLANCO Roberto. The Effect of Tissue Physiological Variablity on Transurethral Ultrasound Therapy of the Prostate. In: Proceedings of 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). Honolulu, HI: Institute of Electrical and Electronics Engineers, 2018, pp. 5701-5704. ISBN 978-1-5386-3646-6.
 TREEBY Bradley E., BUDISKÝ Jakub, WISE Elliott S., JARO© Jiří and COX Ben T. Rapid calculation of acoustic fields from arbitrary continuous-wave sources. The Journal of the Acoustical Society of America. 2018, vol. 2018, no. 143, pp. 529-537. ISSN 1520-8524.
 TREEBY Bradley E., VAVERKA Filip and JARO© Jiří. Performance and Accuracy Analysis of Nonlinear k-Wave Simulations Using Local Domain Decomposition with an 8-GPU Server. Proceedings of Meetings on Acoustics. 2018, vol. 34, no. 022002, pp. 1-5. ISSN 1939-800X.
 ČUDOVÁ Marta, TREEBY Bradley E. and JARO© Jiří. Design of HIFU Treatment Plans using Evolutionary Strategy. In: GECCO'18 Companion: Genetic and Evolutionary Computation Conference Companion. Kyoto: Association for Computing Machinery, 2018, pp. 1568-1575. ISBN 978-1-4503-5764-7.
2017BORDOVSKÝ Gabriel and JARO© Jiří. Optimization of Fracture Tests Simulation in Civil Engineering. Ostrava, 2017.
 GEORGIOU Panyiotis, JARO© Jiří, PAYNE Heather, ALLEN Clare, GIBSON Eli, BARRATT Dean and TREEBY Bradley E. Beam Distortion Due to Gold Fiducial Markers During Salvage High-Intensity Focused Ultrasound in the Prostate. Journal of Medical Physics. 111 River St., Hoboken, NJ 07030-5774: American Association of Physicists in Medicine, 2017, vol. 44, no. 2, pp. 679-693. ISSN 0094-2405.
 JARO© Jiří, TREEBY Bradley E. and GEORGIOU Panyiotis. Modelling Beam Distortion during Focused Ultrasound Surgery in the Prostate using k-Wave. Supercomputing in Science and Engineering. Ostrava: V©B-Technical University of Ostrava - IT4I, 2017, pp. 205-207. ISBN 978-80-248-4037-6.
 JARO© Jiří, TREEBY Bradley E. and ROBERTSON James L. Convergence Testing of a k-space Pseudospectral Scheme for Transcranial Time-reversal Focusing. Supercomputing in Science and Engineering. Ostrava: V©B-Technical University of Ostrava - IT4I, 2017, pp. 195-197. ISBN 978-80-248-4037-6.
 JARO© Jiří. High Performance Computing in Ultrasound Cancer Treatment. Brno, 2017.
 KLEPÁRNÍK Petr, ZEMČÍK Pavel and JARO© Jiří. Efficient Lossy Compression of Ultrasound Data. In: 2017 IEEE International Symposium on Signal Processing and Information Technology (ISSPIT). Bilbao: Institute of Electrical and Electronics Engineers, 2017, pp. 232-237. ISBN 978-1-5386-4662-5.
 NIKL Vojtěch, HRADECKÝ Michal, JARO© Jiří and KELEČÉNI Jakub. The investigation of the ARMv7 and Intel Haswell architectures suitability for performance and energy-aware computing. In: High Performance Computing. Cham: Springer International Publishing, 2017, pp. 377-393. ISBN 978-3-319-58667-0.
 ROBERTSON James L., COX Ben T., JARO© Jiří and TREEBY Bradley E. Accurate simulation of transcranial ultrasound propagation for ultrasonic neuromodulation and stimulation. The Journal of the Acoustical Society of America. 2017, vol. 141, no. 3, pp. 1726-1738. ISSN 1520-8524.
 SUOMI Visa, JARO© Jiří, TREEBY Bradley E. and CLEVELAND Robin. Full modelling of high-intensity focused ultrasound and thermal heating in the kidney of realistic patient models. IEEE Transactions on Biomedical Engineering. 2017, vol. 2017, no. 66, pp. 1-12. ISSN 0018-9294.
 TREEBY Bradley E., BUDISKÝ Jakub, WISE Elliott S., JARO© Jiří and COX Ben T. Single-step Calculation of the Acoustic Field from Arbitrary Continuous-wave Sources. Ostrava, 2017.
 VAVERKA Filip, TREEBY Bradley E. and JARO© Jiří. Running Large-Scale Ultrasound Simulations on 256 Salomon Nodes. Ostrava, 2017.
 VAVERKA Filip, TREEBY Bradley E. and JARO© Jiří. Running Large-Scale Ultrasound Simulations on Piz Daint with 512 Pascal GPUs. Denver, 2017.
 ČUDOVÁ Marta and JARO© Jiří. Framework for Planning, Executing and Monitoring Cooperating Computations. Ostrava, 2017.
 ČUDOVÁ Marta. Framework for Planning, Running and Monitoring Cooperating Computations. In: Počítačové architektúry & diagnostika PAD 2017. Bratislava: Slovak University of Technology in Bratislava, 2017, pp. 20-23. ISBN 978-80-972784-0-3.
2016BROWN Michael D., JARO© Jiří, COX Ben T. and TREEBY Bradley E. Control of Broadband Optically Generated Ultrasound Pulses Using Binary Amplitude Holograms. The Journal of the Acoustical Society of America. 2016, vol. 139, no. 4, pp. 1637-1647. ISSN 1520-8524.
 JARO© Jiří, RENDELL Alistair P. and TREEBY Bradley E. Full-wave nonlinear ultrasound simulation on distributed clusters with applications in high-intensity focused ultrasound. The International Journal of High Performance Computing Applications. 2455 Teller Road Thousand Oaks, CA 91320: SAGE Publications, 2016, vol. 2016, no. 2, pp. 137-155. ISSN 1741-2846.
 JARO© Jiří, VAVERKA Filip and TREEBY Bradley E. Spectral Domain Decomposition Using Local Fourier Basis: Application to Ultrasound Simulation on a Cluster of GPUs. Salt Lake City, 2016.
 JARO© Jiří, VAVERKA Filip and TREEBY Bradley E. Spectral Domain Decomposition Using Local Fourier Basis: Application to Ultrasound Simulation on a Cluster of GPUs. International Journal of Supercomputing Frontiers and Innovations. South Ural State University (Chelyabinsk, Russia): Association for Computing Machinery, 2016, vol. 3, no. 3, pp. 39-54. ISSN 2313-8734.
 MERTA Michal, ZAPLETAL Jan and JARO© Jiří. Many Core Acceleration of the Boundary Element Method. In: Proceedings of High Performance Computing in Science and Engineering. Basel: Springer International Publishing, 2016, pp. 116-125. ISBN 978-3-319-40360-1.
 NIKL Vojtěch. High Performance Computing on Low Power Devices. In: Computer achitectures and diagnostics 2016. Brno: Faculty of Information Technology BUT, 2016, pp. 81-84. ISBN 978-80-214-5376-0.
 SUOMI Visa, JARO© Jiří, TREEBY Bradley E. and CLEVELAND Robin. Nonlinear 3-D simulation of high-intensity focused ultrasound therapy in the kidney. In: 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). Orlando: Institute of Electrical and Electronics Engineers, 2016, pp. 5648-5651. ISBN 978-1-4577-0220-4.
 TREEBY Bradley E., JARO© Jiří and COX Ben T. Advanced photoacoustic image reconstruction using the k-Wave toolbox. In: SPIE Proceedings Vol. 9708: Photons Plus Ultrasound: Imaging and Sensing 2016. San Francisco: SPIE - the international society for optics and photonics, 2016, pp. 1-14. ISBN 978-1-62841-942-9.
 VAVERKA Filip, TREEBY Bradley E. and JARO© Jiří. Acceleration of Ultrasound Wave Propagation using a Cluster of GPUs. Frankfurt am Main, 2016.
 VAVERKA Filip. Case Study on Multi-domain Decomposition of k-Wave Simulation Framework. In: Computer achitectures and diagnostics 2016. Brno: Faculty of Information Technology BUT, 2016, pp. 37-40. ISBN 978-80-214-5376-0.

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