pqsfinder: an R/Bioconductor package for identification of potential quadruplex forming sequences

Authors:Hon Jiří, Lexa Matej, Martínek Tomáš, Zendulka Jaroslav
Type:software
Created:2016
Licence:optional
Keywords:G-quadruplex; quadruplex; DNA; R; Bioconductor; pattern matching; searching; annotation
Description:
The main functionality of the this package is to detect DNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, this package is able to detect sequences responsible for G4s folded from imperfect G-runs containing bulges or mismatches and as such is more sensitive than competing algorithms.
Location:
http://bioconductor.org/packages/release/bioc/html/pqsfinder.html
Departments:
Licence terms:
Free software under the terms of BSD license (see http://www.opensource.org/licenses/bsd-license.php).

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