R/Bioconductor package for identification of triplex-forming sequences

Authors:Hon Jiří, Lexa Matej, Martínek Tomáš, Rajdl Kamil
Type:software
Created:2013
Licence:optional
Keywords:H-DNA; R/Bioconductor; pattern matching; dynamic programming; triplex; searching; annotation
Description:
This package provides functions for identification and visualization of potential intramolecular triplex patterns in DNA sequence. The main functionality is to detect the positions of subsequences capable of folding into an intramolecular triplex (H-DNA) in a much larger sequence. The potential H-DNA (triplexes) should be made of as many cannonical nucleotide triplets as possible. The package includes visualization showing the exact base-pairing in 1D, 2D or 3D.
Location:
http://www.bioconductor.org/packages/release/bioc/html/triplex.html
Departments:
Licence terms:
Free software under the terms of BSD license (see http://www.opensource.org/licenses/bsd-license.php).

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