Conference paper

RUDOLFOVÁ Ivana, ZENDULKA Jaroslav and LEXA Matej. Clustering of Protein Substructures for Discovery of a Novel Class of Sequence-Structure Fragments. In: Information Technology in Bio- and Medical Informatics, ITBAM 2010. Heidelberg: Springer Verlag, 2010, pp. 94-101. ISBN 978-3-642-15019-7.
Publication language:english
Original title:Clustering of Protein Substructures for Discovery of a Novel Class of Sequence-Structure Fragments
Title (cs):Shlukování proteinových substruktur pro nalezení nových sekvenčně-strukturních fragmentů
Pages:94-101
Proceedings:Information Technology in Bio- and Medical Informatics, ITBAM 2010
Conference:International Conference on Information Technology in Bio- and Medical Informatics
Series:LNCS 6266
Place:Heidelberg, DE
Year:2010
ISBN:978-3-642-15019-7
Publisher:Springer Verlag
Keywords
Clustering, density-based clustering, clustering of protein substructures, sequence-structure relationships in proteins
Annotation
In this paper, we propose a novel method for clustering of protein substructures that we developed to study the relationships between protein sequences and their corresponding structures. We show the results of the comparison to other commonly used methods for clustering of protein structures. Finally, we outline a procedure for finding sequence profiles that tend to occur in more than one structural conformation but the number of their structural conformations is limited. This procedure is based on our method for protein substructure clustering.
BibTeX:
@INPROCEEDINGS{
   author = {Ivana Rudolfov{\'{a}} and Jaroslav Zendulka and Matej Lexa},
   title = {Clustering of Protein Substructures for Discovery of a Novel
	Class of Sequence-Structure Fragments},
   pages = {94--101},
   booktitle = {Information Technology in Bio- and Medical Informatics,
	ITBAM 2010},
   series = {LNCS 6266},
   year = {2010},
   location = {Heidelberg, DE},
   publisher = {Springer Verlag},
   ISBN = {978-3-642-15019-7},
   language = {english},
   url = {http://www.fit.vutbr.cz/research/view_pub.php.en.iso-8859-2?id=9338}
}

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