Product Details
sigbin: an R/Bioconductor package for signal-based DNA sequence binning
Created: 2016
Czech title
sigbin: R/Bioconductor balíček umožňující shlukování DNA sekvencí podle signálových rysů
Type
software
License
optional - free
Authors
Hon Jiří, Ing., Ph.D. (DIFS FIT BUT)
Kupková Kristýna, Ing. (FEEC BUT)
Sedlář Karel, doc. Mgr. Ing., Ph.D. (FEEC BUT)
Kupková Kristýna, Ing. (FEEC BUT)
Sedlář Karel, doc. Mgr. Ing., Ph.D. (FEEC BUT)
Keywords
DNA, binning, signal, Hjorth parameters
Description
The main functionality of this package is to bin DNA sequences. The sequences are first converted into a phase signal and then three Hjorth parameters are computed - activity, mobility and complexity. The final hierarchical binning is build upon these indicators of statistical properties.
Location
Licence
Free software under the terms of BSD license (see http://www.opensource.org/licenses/bsd-license.php).
Projects
Advanced methods for fast identification and visualization of metagenomic data (FEKT/FIT-J-16-3335)
Departments