Ing. Jiří Jaroą, Ph.D.

2017GEORGIOU Panyiotis, JARO© Jiří, PAYNE Heather, ALLEN Clare, GIBSON Eli, BARRATT Dean a TREEBY Bradley E. Beam Distortion Due to Gold Fiducial Markers During Salvage High-Intensity Focused Ultrasound in the Prostate. Journal of Medical Physics. 111 River St., Hoboken, NJ 07030-5774: American Association of Physicists in Medicine, 2017, roč. 44, č. 2, s. 679-693. ISSN 0094-2405.
 JARO© Jiří, TREEBY Bradley E. a GEORGIOU Panyiotis. Modelling Beam Distortion during Focused Ultrasound Surgery in the Prostate using k-Wave. Supercomputing in Science and Engineering. Ostrava: V©B Technická univerzita Ostrava - IT4I, 2017, s. 205-207. ISBN 978-80-248-4037-6.
 JARO© Jiří, TREEBY Bradley E. a ROBERTSON James L. Convergence Testing of a k-space Pseudospectral Scheme for Transcranial Time-reversal Focusing. Supercomputing in Science and Engineering. Ostrava: V©B Technická univerzita Ostrava - IT4I, 2017, s. 195-197. ISBN 978-80-248-4037-6.
 NIKL Vojtěch, HRADECKÝ Michal, JARO© Jiří a KELEČÉNI Jakub. The investigation of the ARMv7 and Intel Haswell architectures suitability for performance and energy-aware computing. In: High Performance Computing. Cham: Springer International Publishing, 2017, s. 377-393. ISBN 978-3-319-58667-0.
 ROBERTSON James L., COX Ben T., JARO© Jiří a TREEBY Bradley E. Accurate simulation of transcranial ultrasound propagation for ultrasonic neuromodulation and stimulation. The Journal of the Acoustical Society of America. 2017, roč. 141, č. 3, s. 1726-1738. ISSN 1520-8524.
 SUOMI Visa, JARO© Jiří, TREEBY Bradley E. a CLEVELAND Robin. Full modelling of high-intensity focused ultrasound and thermal heating in the kidney of realistic patient models. IEEE Transactions on Biomedical Engineering. 2017, roč. 2017, č. 66, s. 1-12. ISSN 0018-9294.
2016BREITENBACHER Dominik, HOMOLIAK Ivan, JARO© Jiří a HANÁČEK Petr. Impact of Optimization and Parallelism on Factorization Speed of SIQS. In: Proceedings of The 20th World Multi-Conference on Systemics, Cybernetics and Informatics. Orlando: The International Institute of Informatics and Systemics, 2016, s. 55-62. ISBN 978-1-941763-41-4.
 BREITENBACHER Dominik, HOMOLIAK Ivan, JARO© Jiří a HANÁČEK Petr. Impact of Optimization and Parallelism on Factorization Speed of SIQS. Journal on Systemics, Cybernetics and Informatics. 2016, roč. 14, č. 3, s. 51-58. ISSN 1690-4524.
 BROWN Michael D., JARO© Jiří, COX Ben T. a TREEBY Bradley E. Control of Broadband Optically Generated Ultrasound Pulses Using Binary Amplitude Holograms. The Journal of the Acoustical Society of America. 2016, roč. 139, č. 4, s. 1637-1647. ISSN 1520-8524.
 JARO© Jiří, RENDELL Alistair P. a TREEBY Bradley E. Full-wave nonlinear ultrasound simulation on distributed clusters with applications in high-intensity focused ultrasound. The International Journal of High Performance Computing Applications. 2455 Teller Road Thousand Oaks, CA 91320: SAGE Publications, 2016, roč. 2016, č. 2, s. 137-155. ISSN 1741-2846.
 JARO© Jiří, VAVERKA Filip a TREEBY Bradley E. Spectral Domain Decomposition Using Local Fourier Basis: Application to Ultrasound Simulation on a Cluster of GPUs. International Journal of Supercomputing Frontiers and Innovations. South Ural State University (Chelyabinsk, Russia): Association for Computing Machinery, 2016, roč. 3, č. 3, s. 39-54. ISSN 2313-8734.
 MERTA Michal, ZAPLETAL Jan a JARO© Jiří. Many Core Acceleration of the Boundary Element Method. In: Proceedings of High Performance Computing in Science and Engineering. Basel: Springer International Publishing, 2016, s. 116-125. ISBN 978-3-319-40360-1.
 SUOMI Visa, JARO© Jiří, TREEBY Bradley E. a CLEVELAND Robin. Nonlinear 3-D simulation of high-intensity focused ultrasound therapy in the kidney. In: 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). Orlando: Institute of Electrical and Electronics Engineers, 2016, s. 5648-5651. ISBN 978-1-4577-0220-4.
 TREEBY Bradley E., JARO© Jiří a COX Ben T. Advanced photoacoustic image reconstruction using the k-Wave toolbox. In: SPIE Proceedings Vol. 9708: Photons Plus Ultrasound: Imaging and Sensing 2016. San Francisco: SPIE - the international society for optics and photonics, 2016, s. 1-14. ISBN 978-1-62841-942-9.
2015JARO© Jiří, DOHNAL Matěj a TREEBY Bradley E. Large-scale Ultrasound Simulations with Local Fourier Basis Decomposition. The International Conference for High Performance Computing, Networking, Storage Analysis, SC15. Austin, 2015.
 JARO© Jiří, MAREK Jan a MEN©ÍK Pavel. Optimisation of Water Management Systems Using a GPU-Accelerated Differential Evolution. In: Proceedings of 2015 IEEE Symposium Series on Computational Intelligence. Cape Town: IEEE Computer Society, 2015, s. 1727-1734. ISBN 978-1-4799-7560-0.
 JARO© Jiří, NIKL Vojtěch a TREEBY Bradley E. Large-scale Ultrasound Simulations Using the Hybrid OpenMP/MPI Decomposition. In: Proceedings of the 3rd International Conference on Exascale Applications and Software. Edinburgh: Association for Computing Machinery, 2015, s. 115-119. ISBN 978-0-9926615-1-9.
2014GROEN Derek, CHACRA David A., NASH Rupert W., JARO© Jiří, BERNABEU Miguel O. a COVENEY Peter V. Weighted decomposition in high-performance lattice-Boltzmann simulations: are some lattice sites more equal than others?. In: nternational Conference on Exascale Applications and Software, EASC 2014. Stockholm: Springer Verlag, 2014, s. 28-38. ISBN 978-3-319-15976-8.
 JARO© Jiří a TYRALA Radek. GPU-accelerated Evolutionary Design of the Complete Exchange Communication on Wormhole Networks. In: GECCO '14 Proceedings of the 2014 conference on Genetic and evolutionary computation. New York, NY: Association for Computing Machinery, 2014, s. 1023-1030. ISBN 978-1-4503-2662-9.
 NIKL Vojtěch a JARO© Jiří. Parallelisation of the 3D Fast Fourier Transform Using the Hybrid OpenMP/MPI Decomposition. In: Mathematical and Engineering Methods in Computer Science. Heidelberg: Springer International Publishing, 2014, s. 100-112. ISBN 978-3-319-14895-3.
 TREEBY Bradley E., JARO© Jiří, ROHRBACH Daniel a COX Ben T. Modelling elastic wave propagation using the k-Wave MATLAB toolbox. In: 2014 IEEE International Ultrasonics Symposium (IUS). Chicago, IL: Institute of Electrical and Electronics Engineers, 2014, s. 146-149. ISBN 978-1-4799-7049-0.
 ZÁŇ Drahoslav a JARO© Jiří. Solving the Multidimensional Knapsack Problem using a CUDA Accelerated PSO. In: 2014 IEEE Congress on Evolutionary Computation. Beijing: IEEE Computational Intelligence Society, 2014, s. 2933-2939. ISBN 978-1-4799-1488-3.
2013BASERMANN Achim, MATURA Gregor, CHEN Fang, FLATKEN Markus, GERNDT Andreas, HETHERINGTON James, KRÜGER Tim, JARO© Jiří a NASH Rupert W. Exascale Pre and Post Processing. Barcelona, 2013.
2012JARO© Jiří a POSPÍCHAL Petr. A Fair Comparison of Modern CPUs and GPUs Running the Genetic Algorithm under the Knapsack Benchmark. Lecture Notes in Computer Science. 2012, roč. 2012, č. 7248, s. 426-435. ISSN 0302-9743.
 JARO© Jiří, TREEBY Bradley E. a RENDELL Alistair P. Use of Multiple GPUs on Shared Memory Multiprocessors for Ultrasound Propagation Simulations. In: Australasian Symposium on Parallel and Distributed Computing (AusPDC 2012). Melbourne, 2012, s. 43-52. ISBN 978-1-921770-08-1.
 JARO© Jiří. Multi-GPU Island-Based Genetic Algorithm Solving the Knapsack Problem. In: 2012 IEEE World Congress on Computational Intelligence. CA: Institute of Electrical and Electronics Engineers, 2012, s. 217-224. ISBN 978-1-4673-1508-1.
 NANDAPALAN Nimalan, JARO© Jiří, TREEBY Bradley E. a RENDELL Alistair P. Implementation of 3D FFTs across Multiple GPUs in Shared Memory Environments. In: Proceedings of the Thirteenth International Conference on Parallel and Distributed Computing, Applications and Technologies. Beijing, 2012, s. 167-172. ISBN 978-0-7695-4879-1.
 TREEBY Bradley E., JARO© Jiří, RENDELL Alistair P. a COX Ben T. Modeling nonlinear ultrasound propagation in heterogeneous media with power law absorption using a k-space pseudospectral method. The Journal of the Acoustical Society of America. 2012, roč. 2012, č. 131, s. 4324-4336. ISSN 1520-8524.
 WANG Kejia, TEOH Emily, JARO© Jiří a TREEBY Bradley E. Modelling Nonlinear Ultrasound Propagation in Absorbing Media using the k-Wave Toolbox: Experimental Validation. In: 2012 IEEE International Ultrasonics Symposium. Dresden: Institute of Electrical and Electronics Engineers, 2012, s. 523-526. ISBN 978-1-4673-4561-3.
2011DVOŘÁK Václav a JARO© Jiří. A Programmable Interconnection Network for Multiple Communication Patterns. In: Proceedings of the Sixth International Conference on Systems, ICONS 2011. St. Maarten: Mezinárodní asociace univerzit, výzkumu a průmyslu, 2011, s. 6-11. ISBN 978-1-61208-002-4.
 JARO© Jiří a DVOŘÁK Václav. Evolutionary Design of Collective Communications on Wormhole NoCs. Autonomic Networking-On-Chip: Bio-Inspired Specification, Development, and Verification. London: CRC Press LLC, 2011, s. 60-94. ISBN 978-1-4398-2911-0.
 JARO© Jiří a DVOŘÁK Václav. Optimizing Collective Communications on the K-port Spidergon Network. In: Proceedings of the Sixth International Conference on Systems, ICONS 2011. St. Maarten: Mezinárodní asociace univerzit, výzkumu a průmyslu, 2011, s. 24-29. ISBN 978-1-61208-002-4.
 POSPÍCHAL Petr, JARO© Jiří a SCHWARZ Josef. Akcelerace gramatické evoluce s pouľitím grafických čipů. 7th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: Vysoké učení technické v Brně, 2011. ISBN 978-80-214-4305-1.
 POSPÍCHAL Petr, SCHWARZ Josef a JARO© Jiří. Acceleration of grammatical evolution using graphics processing units: computational intelligence on consumer games and graphics hardware. In: Proceedings of the 2011 GECCO conference companion on Genetic and evolutionary computation. New York: Association for Computing Machinery, 2011, s. 431-439. ISBN 978-1-4503-0690-4.
2010DVOŘÁK Václav a JARO© Jiří. Optimizing Collective Communications on 2D-Mesh and Fat Tree NoC. In: Proceedings of the Ninth International Conference on Networks ICN 2010. Piscataway, NJ: IEEE Computer Society, 2010, s. 22-27. ISBN 978-0-7695-3979-9.
 JARO© Jiří a DVOŘÁK Václav. Evolutionary-Based Conflict-Free Scheduling of Collective Communications on Spidergon NoCs. In: Proceedings of 2010 Genetic and Evolutionary Computation Conference. New York: Association for Computing Machinery, 2010, s. 1171-1178. ISBN 978-1-4503-0072-8.
 JARO© Jiří. Evolutionary Design of Collective Communications on Wormhole Networks. Brno: Nakladatelství Vysokého učení technického v Brně VUTIUM, 2010. ISBN 978-80-214-4208-5.
 KOTÁSEK Zdeněk, BIDLO Michal a JARO© Jiří, ed. Počítačové architektury a diagnostika. Brno: Fakulta informačních technologií VUT v Brně, 2010. ISBN 978-80-214-4140-8.
 POSPÍCHAL Petr, JARO© Jiří a SCHWARZ Josef. Parallel Genetic Algorithm on the CUDA Architecture. In: Applications of Evolutionary Computation. Berlin Heidelberg: Springer Verlag, 2010, s. 442-451. ISBN 978-3-642-12238-5.
 POSPÍCHAL Petr, JARO© Jiří a SCHWARZ Josef. Parallel Genetic Algorithm on the CUDA Architecture. In: 6th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: Masarykova universita, 2010, s. 210-2011. ISBN 978-80-87342-10-7.
 POSPÍCHAL Petr, SCHWARZ Josef a JARO© Jiří. Parallel Genetic Algorithm Solving 0/1 Knapsack Problem Running on the GPU. In: 16th International Conference on Soft Computing MENDEL 2010. Brno: Vysoké učení technické v Brně, 2010, s. 64-70. ISBN 978-80-214-4120-0.
2009JARO© Jiří a SCHWARZ Josef. Parallel BMDA with an Aggregation of Probability Models. In: Proceeding of 2009 IEEE Congress on Evolutionary Computation. Trondheim: IEEE Computational Intelligence Society, 2009, s. 1683-1690. ISBN 978-1-4244-2959-2.
 JARO© Jiří. Evolutionary Optimization of Multistage Interconnection Networks Performance. In: Proceeding of Genetic and Evolutionary Computation Conference, GECCO 2009. New York: Association for Computing Machinery, 2009, s. 1537-1544. ISBN 978-1-60558-325-9.
 SEKANINA Lukáą, VA©ÍČEK Zdeněk, RŮ®IČKA Richard, BIDLO Michal, JARO© Jiří a ©VENDA Petr. Evoluční hardware: Od automatického generování patentovatelných invencí k sebemodifikujícím se strojům. Praha: Nakladatelství Academia, 2009. ISBN 978-80-200-1729-1.
2008JARO© Jiří a DVOŘÁK Václav. An Evolutionary Design Technique for Collective Communications on Optimal Diameter-Degree Networks. In: 2008 Genetic and Evolutionary Computational Conference GECCO. New York: Association for Computing Machinery, 2008, s. 1539-1546. ISBN 978-1-60558-131-6.
 JARO© Jiří a SCHWARZ Josef. Evoluční návrh wormhole kolektivních komunikací. In: Proceedings of Junior Scientist Conference 2008. Vienna: Technische Universitaet Wien, 2008, s. 2. ISBN 978-3-200-01612-5.
 JARO© Jiří. Evolutionary Design of Fault Tolerant Collective Communications. In: Evolvable Systems: From Biology to Hardware. Berlin: Springer Verlag, 2008, s. 261-272. ISBN 978-3-540-85856-0.
 SCHWARZ Josef a JARO© Jiří. Parallel Bivariate Marginal Distribution Algorithm with Probability Model Migration. Linkage in Evolutionary Computation. Berlin / Heidelberg: Springer Verlag, 2008, s. 3-23. ISBN 978-3-540-85067-0.
2007DVOŘÁK Václav, JARO© Jiří a OHLÍDAL Miloą. Optimum Topology-Aware Scheduling of Many-to-Many Collective Communications. In: Proceedings of The Sixth International Conference on Networking. New York: IEEE Computer Society, 2007, s. 1-6. ISBN 0-7695-2805-8.
 JARO© Jiří a SCHWARZ Josef. Parallel BMDA with Probability Model Migration. In: Proceeding of 2007 IEEE Congress on Evolutionary Computation. Singapore: IEEE Computer Society, 2007, s. 1059-1066. ISBN 1-4244-1340-0.
 JARO© Jiří, OHLÍDAL Miloą a DVOŘÁK Václav. An Evolutionary Approach to Collective Communication Scheduling. In: 2007 Genetic and Evolutionary Computation Conference. New York: Association for Computing Machinery, 2007, s. 2037-2044. ISBN 978-1-59593-697-4.
 JARO© Jiří. Optimalizace kolektivních komunikací na wormhole propojovacích sítích. In: Sborník příspěvků semináře Počítačové architektury a diagnostika pro studenty doktorského studia. Plzeň: Západočeská univerzita v Plzni, 2007, s. 6. ISBN 987-80-7043-605-9.
 SCHWARZ Josef, JARO© Jiří a OČENÁ©EK Jiří. Migration of Probabilistic Models for Island-Based Bivariate EDA Algorithm. In: 2007 Genetic and Evolutionary Computational Conference. New York: Association for Computing Machinery, 2007, s. 631-631. ISBN 978-1-59593-697-4.
2006JARO© Jiří a DVOŘÁK Václav. Evolutionary Design of OAB and AAB Communication Schedules for Networking Systems on Chips. In: Proc. of 2006 IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop. Praha: IEEE Computer Society, 2006, s. 222-223. ISBN 1-4244-0184-4.
 JARO© Jiří a DVOŘÁK Václav. Evolutionary Design of OAB and AAB Communication Schedules for Networking Systems on Chips. In: MEMICS 2006 Second Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Mikulov: Masarykova universita, 2006, s. 63-68. ISBN 80-214-3287-X.
 JARO© Jiří, OHLÍDAL Miloą a DVOŘÁK Václav. Complexity of Collective Communications on NoCs. In: Proc. of 5th International Symposium on Parallel Computing in Electrical Engineering. Los Alamitos, CA 90720-1314: IEEE Computer Society, 2006, s. 127-132. ISBN 0-7695-2554-7.
 JARO© Jiří. Evoluční optimalizace skupinových komunikačních vzorů. In: Zborník príspevkouv pracovného semináre Počítačové architektúry a diagnostika pre studenty doktorského ątúdia. Bratislava: Ústav informatiky Slovenskej akadémie vied, 2006, s. 31-36. ISBN 80-969202-2-7.
 OHLÍDAL Miloą, JARO© Jiří a DVOŘÁK Václav. Performance of Collective Communications on Interconnection Networks with Fat Nodes and Edges. In: Proceedings of the Fifth International Conference on Networking ICN 2006. Los Alamitos: IEEE Computer Society, 2006, s. 619-624. ISBN 0-7695-2570-9.
 OHLÍDAL Miloą, JARO© Jiří, DVOŘÁK Václav a SCHWARZ Josef. Evolutionary Design of OAB and AAB Communication Schedules for Interconnection Networks. In: EvoStar 2006. Berlin: Springer Verlag, 2006, s. 267-278. ISBN 978-3-540-33237-4.
2005JARO© Jiří a DVOŘÁK Václav. Speeding-up OAS and AAS Communication in Networking System on Chips. In: Proc. of 8th IEEE Workshop on Design and Diagnostic of Electronic Circuits and Systems. Sopron: University of West Hungary, 2005, s. 4. ISBN 9639364487.
 JARO© Jiří, OHLÍDAL Miloą a DVOŘÁK Václav. Evolutionary Design of Group Communication Schedules for Interconnection Networks. In: Proceedings of the 20th International Symposium Computer and Information Sciences - ISCIS 2005. Berlin: Springer Verlag, 2005, s. 472-481. ISBN 978-3-540-29414-6.
 JARO© Jiří. Hledání optimálních plánů skupinové komunikace OAB. In: Sborník příspěvků ze semináře Počítačové Architektury a Diagnostika. Karlovo náměstí 13, Praha: České vysoké učení technické, 2005, s. 67-72. ISBN 80-01-03298-1.
2004JARO© Jiří a SCHWARZ Josef. Development tools for rapid prototyping of evolutionary algorithms. In: Proceedings of 38th International conference MOSIS'04. Roľnov pod Radhoątěm: MARQ, 2004, s. 97-104. ISBN 80-85988-98-4.
 JARO© Jiří. Vývojové prostředky pro rychlé prototypování genetických algoritmů. Brno: Grantová agentura České republiky, 2004.
 JARO© Jiří. Úloha plánování procesů na paralelním multiprocesorovém systému pomocí bayesovských optimalizačních algoritmů. In: Zborník príspevkov ze seminara Počítačové Architektury a Diagnostika. Bratislava: Slovenská technická univerzita v Bratislavě, 2004, s. 60-65. ISBN 80-969202-0-0.
 SCHWARZ Josef a JARO© Jiří. A PROBLEM KNOWLEDGE BASED BAYESIAN OPTIMIZATION ALGORITHM APPLIED IN MULTIPROCESSOR SCHEDULING. In: Mendel Conference on Soft Computing. Brno: Fakulta strojního inľenýrství VUT, 2004, s. 83-88. ISBN 80-214-2676-4.
 SCHWARZ Josef, OČENÁ©EK Jiří a JARO© Jiří. Advanced Bayesian Optimization Algorithms Applied in Decomposition Problems. In: Proceedings of ECBS 2004. Los Alamitos: IEEE Computer Society, 2004, s. 102-111. ISBN 0-7695-2125-8.

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