Ing. Jiří Jaroą, Ph.D.

2017GEORGIOU Panyiotis, JARO© Jiří, PAYNE Heather, ALLEN Clare, GIBSON Eli, BARRATT Dean and TREEBY Bradley E. Beam Distortion Due to Gold Fiducial Markers During Salvage High-Intensity Focused Ultrasound in the Prostate. Journal of Medical Physics. 111 River St., Hoboken, NJ 07030-5774: American Association of Physicists in Medicine, 2017, vol. 44, no. 2, pp. 679-693. ISSN 0094-2405.
2016BREITENBACHER Dominik, HOMOLIAK Ivan, JARO© Jiří and HANÁČEK Petr. Impact of Optimization and Parallelism on Factorization Speed of SIQS. In: Proceedings of The 20th World Multi-Conference on Systemics, Cybernetics and Informatics. Orlando: The International Institute of Informatics and Systemics, 2016, pp. 55-62. ISBN 978-1-941763-41-4.
 BREITENBACHER Dominik, HOMOLIAK Ivan, JARO© Jiří and HANÁČEK Petr. Impact of Optimization and Parallelism on Factorization Speed of SIQS. Journal on Systemics, Cybernetics and Informatics. 2016, vol. 14, no. 3, pp. 51-58. ISSN 1690-4524.
 BROWN Michael D., JARO© Jiří, COX Ben T. and TREEBY Bradley E. Control of Broadband Optically Generated Ultrasound Pulses Using Binary Amplitude Holograms. The Journal of the Acoustical Society of America. 2016, vol. 139, no. 4, pp. 1637-1647. ISSN 1520-8524.
 JARO© Jiří, RENDELL Alistair P. and TREEBY Bradley E. Full-wave nonlinear ultrasound simulation on distributed clusters with applications in high-intensity focused ultrasound. The International Journal of High Performance Computing Applications. 2455 Teller Road Thousand Oaks, CA 91320: SAGE Publications, 2016, vol. 2016, no. 2, pp. 137-155. ISSN 1741-2846.
 JARO© Jiří, VAVERKA Filip and TREEBY Bradley E. Spectral Domain Decomposition Using Local Fourier Basis: Application to Ultrasound Simulation on a Cluster of GPUs. International Journal of Supercomputing Frontiers and Innovations. South Ural State University (Chelyabinsk, Russia): Association for Computing Machinery, 2016, vol. 3, no. 3, pp. 39-54. ISSN 2313-8734.
 MERTA Michal, ZAPLETAL Jan and JARO© Jiří. Many Core Acceleration of the Boundary Element Method. In: Proceedings of High Performance Computing in Science and Engineering. Basel: Springer International Publishing, 2016, pp. 116-125. ISBN 978-3-319-40360-1.
 SUOMI Visa, JARO© Jiří, TREEBY Bradley E. and CLEVELAND Robin. Nonlinear 3-D simulation of high-intensity focused ultrasound therapy in the kidney. In: 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). Orlando: Institute of Electrical and Electronics Engineers, 2016, pp. 5648-5651. ISBN 978-1-4577-0220-4.
 TREEBY Bradley E., JARO© Jiří and COX Ben T. Advanced photoacoustic image reconstruction using the k-Wave toolbox. In: SPIE Proceedings Vol. 9708: Photons Plus Ultrasound: Imaging and Sensing 2016. San Francisco: SPIE - the international society for optics and photonics, 2016, pp. 1-14. ISBN 978-1-62841-942-9.
2015JARO© Jiří, DOHNAL Matěj and TREEBY Bradley E. Large-scale Ultrasound Simulations with Local Fourier Basis Decomposition. The International Conference for High Performance Computing, Networking, Storage Analysis, SC15. Austin, 2015.
 JARO© Jiří, MAREK Jan and MEN©ÍK Pavel. Optimisation of Water Management Systems Using a GPU-Accelerated Differential Evolution. In: Proceedings of 2015 IEEE Symposium Series on Computational Intelligence. Cape Town: IEEE Computer Society, 2015, pp. 1727-1734. ISBN 978-1-4799-7560-0.
 JARO© Jiří, NIKL Vojtěch and TREEBY Bradley E. Large-scale Ultrasound Simulations Using the Hybrid OpenMP/MPI Decomposition. In: Proceedings of the 3rd International Conference on Exascale Applications and Software. Edinburgh: Association for Computing Machinery, 2015, pp. 115-119. ISBN 978-0-9926615-1-9.
2014GROEN Derek, CHACRA David A., NASH Rupert W., JARO© Jiří, BERNABEU Miguel O. and COVENEY Peter V. Weighted decomposition in high-performance lattice-Boltzmann simulations: are some lattice sites more equal than others?. In: nternational Conference on Exascale Applications and Software, EASC 2014. Stockholm: Springer Verlag, 2014, pp. 28-38. ISBN 978-3-319-15976-8.
 JARO© Jiří and TYRALA Radek. GPU-accelerated Evolutionary Design of the Complete Exchange Communication on Wormhole Networks. In: GECCO '14 Proceedings of the 2014 conference on Genetic and evolutionary computation. New York, NY: Association for Computing Machinery, 2014, pp. 1023-1030. ISBN 978-1-4503-2662-9.
 NIKL Vojtěch and JARO© Jiří. Parallelisation of the 3D Fast Fourier Transform Using the Hybrid OpenMP/MPI Decomposition. In: Mathematical and Engineering Methods in Computer Science. Heidelberg: Springer International Publishing, 2014, pp. 100-112. ISBN 978-3-319-14895-3.
 TREEBY Bradley E., JARO© Jiří, ROHRBACH Daniel and COX Ben T. Modelling Elastic Wave Propagation Using the k-Wave MATLAB Toolbox. In: 2014 IEEE International Ultrasonics Symposium (IUS). Chicago, IL: Institute of Electrical and Electronics Engineers, 2014, pp. 146-149. ISBN 978-1-4799-7049-0.
 ZÁŇ Drahoslav and JARO© Jiří. Solving Multidimensional Knapsack Problem using CUDA Accelerated PSO. In: 2014 IEEE Congress on Evolutionary Computation. Beijing: IEEE Computational Intelligence Society, 2014, pp. 2933-2939. ISBN 978-1-4799-1488-3.
2013BASERMANN Achim, MATURA Gregor, CHEN Fang, FLATKEN Markus, GERNDT Andreas, HETHERINGTON James, KRÜGER Tim, JARO© Jiří and NASH Rupert W. Exascale Pre and Post Processing. Barcelona, 2013.
2012JARO© Jiří and POSPÍCHAL Petr. A Fair Comparison of Modern CPUs and GPUs Running the Genetic Algorithm under the Knapsack Benchmark. Lecture Notes in Computer Science. 2012, vol. 2012, no. 7248, pp. 426-435. ISSN 0302-9743.
 JARO© Jiří, TREEBY Bradley E. and RENDELL Alistair P. Use of Multiple GPUs on Shared Memory Multiprocessors for Ultrasound Propagation Simulations. In: Australasian Symposium on Parallel and Distributed Computing (AusPDC 2012). Melbourne, 2012, pp. 43-52. ISBN 978-1-921770-08-1.
 JARO© Jiří. Multi-GPU Island-Based Genetic Algorithm Solving the Knapsack Problem. In: 2012 IEEE World Congress on Computational Intelligence. CA: Institute of Electrical and Electronics Engineers, 2012, pp. 217-224. ISBN 978-1-4673-1508-1.
 NANDAPALAN Nimalan, JARO© Jiří, TREEBY Bradley E. and RENDELL Alistair P. Implementation of 3D FFTs Across Multiple GPUs in Shared Memory Environments. In: Proceedings of the Thirteenth International Conference on Parallel and Distributed Computing, Applications and Technologies. Beijing, 2012, pp. 167-172. ISBN 978-0-7695-4879-1.
 TREEBY Bradley E., JARO© Jiří, RENDELL Alistair P. and COX Ben T. Modeling Nonlinear Ultrasound Propagation in Heterogeneous Media with Power Law Absorption using a k-space Pseudospectral Method. The Journal of the Acoustical Society of America. 2012, vol. 2012, no. 131, pp. 4324-4336. ISSN 1520-8524.
 WANG Kejia, TEOH Emily, JARO© Jiří and TREEBY Bradley E. Modelling Nonlinear Ultrasound Propagation in Absorbing Media using the k-Wave Toolbox: Experimental Validation. In: 2012 IEEE International Ultrasonics Symposium. Dresden: Institute of Electrical and Electronics Engineers, 2012, pp. 523-526. ISBN 978-1-4673-4561-3.
2011DVOŘÁK Václav and JARO© Jiří. A Programmable Interconnection Network for Multiple Communication Patterns. In: Proceedings of the Sixth International Conference on Systems, ICONS 2011. St. Maarten: International Academy, Research, and Industry Association, 2011, pp. 6-11. ISBN 978-1-61208-002-4.
 JARO© Jiří and DVOŘÁK Václav. Evolutionary Design of Collective Communications on Wormhole NoCs. Autonomic Networking-On-Chip: Bio-Inspired Specification, Development, and Verification. London: CRC Press LLC, 2011, pp. 60-94. ISBN 978-1-4398-2911-0.
 JARO© Jiří and DVOŘÁK Václav. Optimizing Collective Communications on the K-port Spidergon Network. In: Proceedings of the Sixth International Conference on Systems, ICONS 2011. St. Maarten: International Academy, Research, and Industry Association, 2011, pp. 24-29. ISBN 978-1-61208-002-4.
 POSPÍCHAL Petr, JARO© Jiří and SCHWARZ Josef. Acceleration of Grammatical Evolution Using Graphics Processing Units. 7th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: Brno University of Technology, 2011. ISBN 978-80-214-4305-1.
 POSPÍCHAL Petr, SCHWARZ Josef and JARO© Jiří. Acceleration of grammatical evolution using graphics processing units: computational intelligence on consumer games and graphics hardware. In: Proceedings of the 2011 GECCO conference companion on Genetic and evolutionary computation. New York: Association for Computing Machinery, 2011, pp. 431-439. ISBN 978-1-4503-0690-4.
2010DVOŘÁK Václav and JARO© Jiří. Optimizing Collective Communications on 2D-Mesh and Fat Tree NoC. In: Proceedings of the Ninth International Conference on Networks ICN 2010. Piscataway, NJ: IEEE Computer Society, 2010, pp. 22-27. ISBN 978-0-7695-3979-9.
 JARO© Jiří and DVOŘÁK Václav. Evolutionary-Based Conflict-Free Scheduling of Collective Communications on Spidergon NoCs. In: Proceedings of 2010 Genetic and Evolutionary Computation Conference. New York: Association for Computing Machinery, 2010, pp. 1171-1178. ISBN 978-1-4503-0072-8.
 JARO© Jiří. Evolutionary Design of Collective Communications on Wormhole Networks. Brno: Publishing house of Brno University of Technology VUTIUM, 2010. ISBN 978-80-214-4208-5.
 KOTÁSEK Zdeněk, BIDLO Michal and JARO© Jiří, ed. Počítačové architektury a diagnostika. Brno: Faculty of Information Technology BUT, 2010. ISBN 978-80-214-4140-8.
 POSPÍCHAL Petr, JARO© Jiří and SCHWARZ Josef. Parallel Genetic Algorithm on the CUDA Architecture. In: Applications of Evolutionary Computation. Berlin Heidelberg: Springer Verlag, 2010, pp. 442-451. ISBN 978-3-642-12238-5.
 POSPÍCHAL Petr, JARO© Jiří and SCHWARZ Josef. Parallel Genetic Algorithm on the CUDA Architecture. In: 6th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: Masaryk University, 2010, pp. 210-2011. ISBN 978-80-87342-10-7.
 POSPÍCHAL Petr, SCHWARZ Josef and JARO© Jiří. Parallel Genetic Algorithm Solving 0/1 Knapsack Problem Running on the GPU. In: 16th International Conference on Soft Computing MENDEL 2010. Brno: Brno University of Technology, 2010, pp. 64-70. ISBN 978-80-214-4120-0.
2009JARO© Jiří and SCHWARZ Josef. Parallel BMDA with an Aggregation of Probability Models. In: Proceeding of 2009 IEEE Congress on Evolutionary Computation. Trondheim: IEEE Computational Intelligence Society, 2009, pp. 1683-1690. ISBN 978-1-4244-2959-2.
 JARO© Jiří. Evolutionary Optimization of Multistage Interconnection Networks Performance. In: Proceeding of Genetic and Evolutionary Computation Conference, GECCO 2009. New York: Association for Computing Machinery, 2009, pp. 1537-1544. ISBN 978-1-60558-325-9.
 SEKANINA Lukáą, VA©ÍČEK Zdeněk, RŮ®IČKA Richard, BIDLO Michal, JARO© Jiří and ©VENDA Petr. Evoluční hardware: Od automatického generování patentovatelných invencí k sebemodifikujícím se strojům. Praha: Academia, 2009. ISBN 978-80-200-1729-1.
2008JARO© Jiří and DVOŘÁK Václav. An Evolutionary Design Technique for Collective Communications on Optimal Diameter-Degree Networks. In: 2008 Genetic and Evolutionary Computational Conference GECCO. New York: Association for Computing Machinery, 2008, pp. 1539-1546. ISBN 978-1-60558-131-6.
 JARO© Jiří and SCHWARZ Josef. Evolutionary Design of Wormhole Switched Collective Communications. In: Proceedings of Junior Scientist Conference 2008. Vienna: TU Vienna, 2008, p. 2. ISBN 978-3-200-01612-5.
 JARO© Jiří. Evolutionary Design of Fault Tolerant Collective Communications. In: Evolvable Systems: From Biology to Hardware. Berlin: Springer Verlag, 2008, pp. 261-272. ISBN 978-3-540-85856-0.
 SCHWARZ Josef and JARO© Jiří. Parallel Bivariate Marginal Distribution Algorithm with Probability Model Migration. Linkage in Evolutionary Computation. Berlin / Heidelberg: Springer Verlag, 2008, pp. 3-23. ISBN 978-3-540-85067-0.
2007DVOŘÁK Václav, JARO© Jiří and OHLÍDAL Miloą. Optimum Topology-Aware Scheduling of Collective Communications. In: Proceedings of The Sixth International Conference on Networking. New York: IEEE Computer Society, 2007, pp. 1-6. ISBN 0-7695-2805-8.
 JARO© Jiří and SCHWARZ Josef. Parallel BMDA with Probability Model Migration. In: Proceeding of 2007 IEEE Congress on Evolutionary Computation. Singapore: IEEE Computer Society, 2007, pp. 1059-1066. ISBN 1-4244-1340-0.
 JARO© Jiří, OHLÍDAL Miloą and DVOŘÁK Václav. An Evolutionary Approach to Collective Communication Scheduling. In: 2007 Genetic and Evolutionary Computation Conference. New York: Association for Computing Machinery, 2007, pp. 2037-2044. ISBN 978-1-59593-697-4.
 JARO© Jiří. Optimalizace kolektivních komunikací na wormhole propojovacích sítích. In: Sborník příspěvků semináře Počítačové architektury a diagnostika pro studenty doktorského studia. Plzeň: University of West Bohemia in Pilsen, 2007, p. 6. ISBN 987-80-7043-605-9.
 SCHWARZ Josef, JARO© Jiří and OČENÁ©EK Jiří. Migration of Probabilistic Models for Island-Based Bivariate EDA Algorithm. In: 2007 Genetic and Evolutionary Computational Conference. New York: Association for Computing Machinery, 2007, pp. 631-631. ISBN 978-1-59593-697-4.
2006JARO© Jiří and DVOŘÁK Václav. Evolutionary Design of OAB and AAB Communication Schedules for Networking Systems on Chips. In: Proc. of 2006 IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop. Praha: IEEE Computer Society, 2006, pp. 222-223. ISBN 1-4244-0184-4.
 JARO© Jiří and DVOŘÁK Václav. Evolutionary Design of OAB and AAB Communication Schedules for Networking Systems on Chips. In: MEMICS 2006 Second Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Mikulov: Masaryk University, 2006, pp. 63-68. ISBN 80-214-3287-X.
 JARO© Jiří, OHLÍDAL Miloą and DVOŘÁK Václav. Complexity of Collective Communications on NoCs. In: Proc. of 5th International Symposium on Parallel Computing in Electrical Engineering. Los Alamitos, CA 90720-1314: IEEE Computer Society, 2006, pp. 127-132. ISBN 0-7695-2554-7.
 JARO© Jiří. Evoluční optimalizace skupinových komunikačních vzorů. In: Zborník príspevkouv pracovného semináre Počítačové architektúry a diagnostika pre studenty doktorského ątúdia. Bratislava: Institute of Informatics, Slovak Academy of Sciences, 2006, pp. 31-36. ISBN 80-969202-2-7.
 OHLÍDAL Miloą, JARO© Jiří and DVOŘÁK Václav. Performance of Collective Communications on Interconnection Networks with Fat Nodes and Edges. In: Proceedings of the Fifth International Conference on Networking ICN 2006. Los Alamitos: IEEE Computer Society, 2006, pp. 619-624. ISBN 0-7695-2570-9.
 OHLÍDAL Miloą, JARO© Jiří, DVOŘÁK Václav and SCHWARZ Josef. Evolutionary Design of OAB and AAB Communication Schedules for Interconnection Networks. In: EvoStar 2006. Berlin: Springer Verlag, 2006, pp. 267-278. ISBN 978-3-540-33237-4.
2005JARO© Jiří and DVOŘÁK Václav. Speeding-up OAS and AAS Communication in Networking System on Chips. In: Proc. of 8th IEEE Workshop on Design and Diagnostic of Electronic Circuits and Systems. Sopron: University of West Hungary, 2005, p. 4. ISBN 9639364487.
 JARO© Jiří, OHLÍDAL Miloą and DVOŘÁK Václav. Evolutionary Design of Group Communication Schedules for Interconnection Networks. In: Proceedings of the 20th International Symposium Computer and Information Sciences - ISCIS 2005. Berlin: Springer Verlag, 2005, pp. 472-481. ISBN 978-3-540-29414-6.
 JARO© Jiří. Hledání optimálních plánů skupinové komunikace OAB. In: Sborník příspěvků ze semináře Počítačové Architektury a Diagnostika. Karlovo náměstí 13, Praha: Czech Technical University, 2005, pp. 67-72. ISBN 80-01-03298-1.
2004JARO© Jiří and SCHWARZ Josef. Development tools for rapid prototyping of evolutionary algorithms. In: Proceedings of 38th International conference MOSIS'04. Roľnov pod Radhoątěm, 2004, pp. 97-104. ISBN 80-85988-98-4.
 JARO© Jiří. Vývojové prostředky pro rychlé prototypování genetických algoritmů. Brno: Czech Science Foundation, 2004.
 JARO© Jiří. Úloha plánování procesů na paralelním multiprocesorovém systému pomocí bayesovských optimalizačních algoritmů. In: Zborník príspevkov ze seminara Počítačové Architektury a Diagnostika. Bratislava: Slovak University of Technology in Bratislava, 2004, pp. 60-65. ISBN 80-969202-0-0.
 SCHWARZ Josef and JARO© Jiří. A PROBLEM KNOWLEDGE BASED BAYESIAN OPTIMIZATION ALGORITHM APPLIED IN MULTIPROCESSOR SCHEDULING. In: Mendel Conference on Soft Computing. Brno: Faculty of Mechanical Engineering BUT, 2004, pp. 83-88. ISBN 80-214-2676-4.
 SCHWARZ Josef, OČENÁ©EK Jiří and JARO© Jiří. Advanced Bayesian Optimization Algorithms Applied in Decomposition Problems. In: Proceedings of ECBS 2004. Los Alamitos: IEEE Computer Society, 2004, pp. 102-111. ISBN 0-7695-2125-8.

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