Biomarker - Determination of markers, screening and early diagnostics of cancer diseases using highly automated processing of multidimensional biomedical images

Research leader:Smrž Pavel
Team leaders:Zemčík Pavel
Agency:Ministry of Education, Youth and Sports Czech Republic
Code:2B06052
Start:2006-07-01
End:2011-06-30
Keywords:image processing, bioinformatics
Annotation:
The project aims at the determination of markers, screening and early diagnostics of cancer diseases using highly automated processing of multidimensional biomedical images

Products

2011Images iterative filtering tool using deconvolutional approach, software, 2011
Authors: Štancl Vít
2009Generator of Algebraic Expressions for Classification, software, 2009
Authors: Juránek Roman, Zemčík Pavel
2008Fast Bilateral Filter, software, 2008
Authors: Seeman Michal, Zemčík Pavel
2007Separable Resampling, software, 2007
Authors: Přibyl Bronislav, Seeman Michal, Zemčík Pavel
 Volume data frequency analysis tool, software, 2007
Authors: Seeman Michal

Publications

2012SEEMAN Michal and ZEMČÍK Pavel. Histogram Smoothing for Bilateral Filter. In: GraVisMa 2009. Plzeň: University of West Bohemia in Pilsen, 2012, pp. 145-148. ISBN 978-80-86943-90-9.
2011PŘIBYL Bronislav and ZEMČÍK Pavel. Simple Single View Scene Calibration. In: Advanced Concepts for Intelligent Vision Systems. Ghent: Springer Verlag, 2011, pp. 748-759. ISBN 978-3-642-23686-0. ISSN 0302-9743.
 SEEMAN Michal, ZEMČÍK Pavel, JURÁNEK Roman and HEROUT Adam. Fast bilateral filter for HDR imaging. Journal of Visual Communication and Image Representation. Amsterdam: Elsevier Science, 2011, vol. 2012, no. 1, p. 6. ISSN 1047-3203.
 ZEMČÍK Pavel, PŘIBYL Bronislav, HEROUT Adam and SEEMAN Michal. Accelerated Image Resampling for Geometry Correction. Journal of Real-Time Image Processing. 2011, vol. 6, no. 3, pp. 1-9. ISSN 1861-8200.
 ZEMČÍK Pavel, PŘIBYL Bronislav, ŽÁDNÍK Martin and KORČEK Pavol. Fast and Energy Efficient Image Processing Algorithms using FPGA. In: Proceedings of the 21th Conference on Field Programmable Logic and Applications Workshop. Chania: Institute of Electrical and Electronics Engineers, 2011, p. 2. ISBN 978-0-7695-4529-5.
2010ŠILHAVÁ Jana and SMRŽ Pavel. Combination of Logistic Regression and Boosting to Predict Disease Outcome. Applied Statistics 2010 International Conference. Ribno, Bled, 2010. ISBN 978-961-92487-4-4.
 ŠILHAVÁ Jana and SMRŽ Pavel. Gene Ontology Driven Feature Filtering from Microarray Data. In: Znalosti 2010. Jindřichův Hradec, 2010, pp. 263-266. ISBN 978-80-245-1636-3.
 ŠILHAVÁ Jana and SMRŽ Pavel. Improved Disease Outcome Prediction Based on Microarray and Clinical Data Combination and Pre-validation. In: Biomedical Engineering Systems and Technologies. Valencia: Springer Verlag, 2010, pp. 36-41. ISBN 978-3-540-92218-6.
2009ŠILHAVÁ Jana and SMRŽ Pavel. Additional Predictive Value of Microarray Data Compared to Clinical Variables. In: PRIB 2009, 4th IAPR International Conference on Pattern Recognition in Bioinformatics. Sheffield: University of Sheffield, 2009, pp. 1-6. ISBN 978-0-9563399-0-4.
2008HRADIŠ Michal, HEROUT Adam and ZEMČÍK Pavel. Local Rank Patterns - Novel Features for Rapid Object Detection. In: Proceedings of International Conference on Computer Vision and Graphics 2008. Heidelberg: Springer Verlag, 2008, pp. 1-12. ISSN 0302-9743.
 SMRŽ Pavel, ŠILHAVÁ Jana, KLÉMA Jiří and ŽELEZNÝ Filip. Gene Expression Data Mining Guided by Genomic Background Knowledge. In: SOFSEM 2008: Theory and Practice of Computer Science. Nový Smokovec: Springer Verlag, 2008, pp. 101-111. ISBN 978-80-7097-697-5.
2007PŘIBYL Bronislav and SEEMAN Michal. Precise Image Resampling for Optics Geometry Correction. In: Digital Technologies 2007. Žilina: Faculty of Electrical Engineering of Zilina Univerzity, 2007, pp. 1-6.
 SMRŽ Pavel and ŠILHAVÁ Jana. A Framework for Microarray Data Mining and Processing. In: Information and Intelligent Systems. Varaždin, 2007, pp. 337-343. ISBN 978-953-607130-2.

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