SC@FIT - Supercomputing Technologies Research Group

Publications

2019TREEBY Bradley E., JARO© Jiří, MARTIN Eleanor and COX Ben T. From Biology to Bytes: Predicting the Path of Ultrasound Waves Through the Human Body. Acoustics Today. Melville, NY 11747-4300: American Institute of Physics for the Acoustical Society of America, 2019, vol. 15, no. 2, pp. 36-44. ISSN 1557-0223.
 VAVERKA Filip, TREEBY Bradley E. and JARO© Jiří. Evaluation of the Suitability of Intel Xeon Phi Clusters for the Simulation of Ultrasound Wave Propagation using Pseudospectral Methods. In: 19th International Conference, Faro, Portugal, June 12-14, 2019, Proceedings, Part III. Faro: Springer International Publishing, 2019, pp. 577-590. ISBN 978-3-030-22743-2.
 WISE Elliott S., COX Ben T., JARO© Jiří and TREEBY Bradley E. Representing arbitrary acoustic source and sensor distributions in Fourier collocation methods. The Journal of the Acoustical Society of America. 2019, vol. 146, no. 1, pp. 278-288. ISSN 1520-8524.
2018BORDOVSKÝ Gabriel, COX Ben T. and JARO© Jiří. Photoacoustic Tomography Using the k-Wave Toolbox. Ostrava, 2018.
 BORDOVSKÝ Gabriel. Challenges In the Computer Photoacoustic Tomograpy Using the k-Wave Toolbox. In: Počítačové architektúry & diagnostika PAD 2018. Plzeň: University of West Bohemia in Pilsen, 2018, pp. 49-52. ISBN 978-80-261-0814-6.
 DANTUMA Maura, LUCKA Felix, TREEBY Bradley E., JARO© Jiří, COX Ben T. and MANOHAR Srirang. Signal Frequency Content and Appearance of Tumors in Photoacoustic Breast Tomography: A Simulation. Caparica, 2018.
 JARO© Marta, TREEBY Bradley E. and JARO© Jiří. Design of HIFU Treatment Plans using an Evolutionary Strategy. Ostrava, 2018.
 JARO© Marta. Scientific Workflows Management. In: Počítačové architektúry & diagnostika PAD 2018. Plzeň: University of West Bohemia in Pilsen, 2018, pp. 25-28. ISBN 978-80-261-0814-6.
 KADLUBIAK Kristián, JARO© Jiří and TREEBY Bradley E. GPU-accelerated Simulation of Elastic Wave Propagation. Frankfurt am Main, 2018.
 KADLUBIAK Kristián, JARO© Jiří and TREEBY Bradley E. GPU-accelerated Simulation of Elastic Wave Propagation. In: 2018 International Conference on High Performance Computing & Simulation (HPCS). Orleans: IEEE Computer Society, 2018, pp. 188-195. ISBN 978-1-5386-7879-4.
 KADLUBIAK Kristián, TREEBY Bradley E. and JARO© Jiří. Fourth-order Time-stepping Scheme in Simulation of Ultrasound Propagation. Ostrava, 2018.
 KLEPÁRNÍK Petr, BAŘINA David, ZEMČÍK Pavel and JARO© Jiří. Efficient Low-Resource Compression of HIFU Data. Information. Basel: MDPI, 2018, vol. 9, no. 7, pp. 1-14. ISSN 2078-2489.
 KOZUBEK Tomáą, ČERMÁK Martin, TICHÝ Petr, BLAHETA Radim, ©ÍSTEK Jakub, LUKÁ© Dalibor and JARO© Jiří, ed. HPCSE: 3rd International Conference on High Performance Computing in Science and Engineering. Cham: Springer International Publishing, 2018. ISBN 978-3-319-97135-3.
 SUOMI Visa, JARO© Jiří, TREEBY Bradley E. and CLEVELAND Robin. Full modelling of high-intensity focused ultrasound and thermal heating in the kidney of realistic patient models. IEEE Transactions on Biomedical Engineering. 2018, vol. 2018, no. 65, pp. 2660-2670. ISSN 0018-9294.
 SUOMI Visa, TREEBY Bradley E., JARO© Jiří, MAKELA Pietari, ANTTINEN Mikael, SAUNAVAARA Jani, SAINIO Teija, KIVINIEMI Aida and BLANCO Roberto. Transurethral ultrasound therapy of the prostate in the presence of calcifications: a simulation study. Journal of Medical Physics. 111 River St., Hoboken, NJ 07030-5774: American Association of Physicists in Medicine, 2018, vol. 45, no. 11, pp. 4793-4804. ISSN 0094-2405.
 SUOMI Visa, TREEBY Bradley E., JARO© Jiří, SAUNAVAARA Jani, KIVINIEMI Aida and BLANCO Roberto. The Effect of Tissue Physiological Variablity on Transurethral Ultrasound Therapy of the Prostate. In: Proceedings of 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). Honolulu, HI: Institute of Electrical and Electronics Engineers, 2018, pp. 5701-5704. ISBN 978-1-5386-3646-6.
 TREEBY Bradley E., BUDISKÝ Jakub, WISE Elliott S., JARO© Jiří and COX Ben T. Rapid calculation of acoustic fields from arbitrary continuous-wave sources. The Journal of the Acoustical Society of America. 2018, vol. 2018, no. 143, pp. 529-537. ISSN 1520-8524.
 TREEBY Bradley E., VAVERKA Filip and JARO© Jiří. Performance and Accuracy Analysis of Nonlinear k-Wave Simulations Using Local Domain Decomposition with an 8-GPU Server. Proceedings of Meetings on Acoustics. 2018, vol. 34, no. 022002, pp. 1-5. ISSN 1939-800X.
 VAVERKA Filip, TREEBY Bradley E. and JARO© Jiří. Running Large-Scale Ultrasound Simulations on Intel Xeon Phi (KNC) accelerators. Ostrava, 2018.
 VAVERKA Filip, ©PE«KO Matej, TREEBY Bradley E. and JARO© Jiří. Optimization of Ultrasound Simulations on Multi-GPU Servers. Dallas, 2018.
 ČUDOVÁ Marta, TREEBY Bradley E. and JARO© Jiří. Design of HIFU Treatment Plans using Evolutionary Strategy. In: GECCO'18 Companion: Genetic and Evolutionary Computation Conference Companion. Kyoto: Association for Computing Machinery, 2018, pp. 1568-1575. ISBN 978-1-4503-5764-7.
2017BORDOVSKÝ Gabriel and JARO© Jiří. Optimization of Fracture Tests Simulation in Civil Engineering. Ostrava, 2017.
 GEORGIOU Panyiotis, JARO© Jiří, PAYNE Heather, ALLEN Clare, GIBSON Eli, BARRATT Dean and TREEBY Bradley E. Beam Distortion Due to Gold Fiducial Markers During Salvage High-Intensity Focused Ultrasound in the Prostate. Journal of Medical Physics. 111 River St., Hoboken, NJ 07030-5774: American Association of Physicists in Medicine, 2017, vol. 44, no. 2, pp. 679-693. ISSN 0094-2405.
 JARO© Jiří, TREEBY Bradley E. and GEORGIOU Panyiotis. Modelling Beam Distortion during Focused Ultrasound Surgery in the Prostate using k-Wave. Supercomputing in Science and Engineering. Ostrava: V©B-Technical University of Ostrava - IT4I, 2017, pp. 205-207. ISBN 978-80-248-4037-6.
 JARO© Jiří, TREEBY Bradley E. and ROBERTSON James L. Convergence Testing of a k-space Pseudospectral Scheme for Transcranial Time-reversal Focusing. Supercomputing in Science and Engineering. Ostrava: V©B-Technical University of Ostrava - IT4I, 2017, pp. 195-197. ISBN 978-80-248-4037-6.
 JARO© Jiří. High Performance Computing in Ultrasound Cancer Treatment. Brno, 2017.
 KLEPÁRNÍK Petr, ZEMČÍK Pavel and JARO© Jiří. Efficient Lossy Compression of Ultrasound Data. In: 2017 IEEE International Symposium on Signal Processing and Information Technology (ISSPIT). Bilbao: Institute of Electrical and Electronics Engineers, 2017, pp. 232-237. ISBN 978-1-5386-4662-5.
 NIKL Vojtěch, HRADECKÝ Michal, JARO© Jiří and KELEČÉNI Jakub. The investigation of the ARMv7 and Intel Haswell architectures suitability for performance and energy-aware computing. In: High Performance Computing. Cham: Springer International Publishing, 2017, pp. 377-393. ISBN 978-3-319-58667-0.
 ROBERTSON James L., COX Ben T., JARO© Jiří and TREEBY Bradley E. Accurate simulation of transcranial ultrasound propagation for ultrasonic neuromodulation and stimulation. The Journal of the Acoustical Society of America. 2017, vol. 141, no. 3, pp. 1726-1738. ISSN 1520-8524.
 TREEBY Bradley E., BUDISKÝ Jakub, WISE Elliott S., JARO© Jiří and COX Ben T. Single-step Calculation of the Acoustic Field from Arbitrary Continuous-wave Sources. Ostrava, 2017.
 VAVERKA Filip, TREEBY Bradley E. and JARO© Jiří. Running Large-Scale Ultrasound Simulations on 256 Salomon Nodes. Ostrava, 2017.
 VAVERKA Filip, TREEBY Bradley E. and JARO© Jiří. Running Large-Scale Ultrasound Simulations on Piz Daint with 512 Pascal GPUs. Denver, 2017.
 ČUDOVÁ Marta and JARO© Jiří. Framework for Planning, Executing and Monitoring Cooperating Computations. Ostrava, 2017.
 ČUDOVÁ Marta. Framework for Planning, Running and Monitoring Cooperating Computations. In: Počítačové architektúry & diagnostika PAD 2017. Bratislava: Slovak University of Technology in Bratislava, 2017, pp. 20-23. ISBN 978-80-972784-0-3.

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